Workshop materials for scRNAseq Analysis in R with Seurat, run by members of QCIF, SIH, Monash, and the Australian BioCommons. Topics covered include QC, normalisation, dimensionality reduction, batch correction (Harmony), clustering, cell type annotation (SingleR), and differential expression.
Visit the Workshop page.
| Path | Description |
|---|---|
part1/ and part2/ |
Workshop sections (*.Rmd files) that learners work through sequentially with follow-along and self-guided exercises |
data/ |
Input datasets used during the workshop |
scripts/ |
Helper and preprocessing scripts |
setup/ |
Training environment (VM) setup files |
_bookdown.yml, _output.yml, _common.R, etc. |
Auxiliary files for rendering the bookdown site |