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Support zarr files as input & output for scverse related modules

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

Status: Open.

#11559 In nf-core/modules;

· Zethson opened on May 7, 2026

KRAKENUNIQ_BUILD is deleting the symlinked inputs when keep_intermediates is false.

bugSomething isn't workingSomething isn't working

Status: Open.

#11557 In nf-core/modules;

· mahesh-panchal opened on May 7, 2026

[FEATURE] module RustQC

Status: Open.

#11542 In nf-core/modules;

· FabianAndradeLozano opened on May 6, 2026

update module: nanoplot and topic channel migration

update module

Status: Open.

#11527 In nf-core/modules;

· FernandoDuarteF opened on May 5, 2026

Prokka: unpinned GNU Parallel in Conda env causes CI test failures with version 20260422

bugSomething isn't workingSomething isn't working

Status: Open.

#11517 In nf-core/modules;

· Daniel-VM opened on May 4, 2026

new module: octopusv/merge

new moduleAdding a new moduleAdding a new module

Status: Open.

#11516 In nf-core/modules;

· manascripts opened on May 4, 2026

Migration to topic channels: gecco/convert

Status: Open.

#11509 In nf-core/modules;

· LouisLeNezet opened on May 4, 2026

Migration to topic channels: getorganelle/fromreads

Status: Open.

#11504 In nf-core/modules;

· LouisLeNezet opened on May 4, 2026

Migration to topic channels: getorganelle/config

Status: Open.

#11503 In nf-core/modules;

· LouisLeNezet opened on May 4, 2026

Migration to topic channels: eklipse

Status: Open.

#11466 In nf-core/modules;

· LouisLeNezet opened on May 4, 2026

Migration to topic channels: flash

Status: Open.

#11465 In nf-core/modules;

· LouisLeNezet opened on May 4, 2026

Migration to topic channels: gamma/gamma

update module

Status: Open.

#11461 In nf-core/modules;

· mribeirodantas opened on May 1, 2026